Microglia Subtype Marker Atlas — Hierarchical (2025)

9 umbrella families → 23 sub-states, with parallel human (HUGO) and mouse (MGI) gene symbols, up/down markers, protein markers, denoised gene sets, and DOI-linked references. Mouse symbols are computationally mapped from the human set (with a curated exceptions table); mouse-only homeostatic markers (Fcrls, Siglech) are restored on the mouse side. Independent update of CompCy-lab/microglia-aging-clock.
Microglia sub-state by marker map (human)
Human symbols. Sub-states grouped by umbrella family (left color bar). Green = up-regulated, red = down-regulated, ★ = newly added.
Microglia sub-state by marker map (mouse)
Mouse symbols (same layout). The human-only CXCL8 has no mouse panel column.
Show:
human up human down mouse up mouse down protein (S/I) ★ = newly added sub-state
Downloads: Hierarchical CSV (human+mouse) JSON Denoised signatures